PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 897773
Common NameARALYDRAFT_897773
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 453aa    MW: 49827.7 Da    PI: 7.3386
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
897773genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.22.1e-36751812109
     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssaseceaesssss 81 
             +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak +i+el+++                       +               
  897773  75 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKSSIDELAELppwnpadairlaaanakprrttaK--------------- 162
             79**************************************************************766555555555544443332110............... PP

     TCP  82 asnsssgkaaksaakskksqksaasaln 109
                     + + +++++++q++++  l+
  897773 163 -------TQISLSPPPQQQQQQQQ--LH 181
             .......22222222222222222..22 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-3275181IPR005333Transcription factor, TCP
PROSITE profilePS5136934.14877135IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MATLDSSPSY DDHRRRRRRL DEDADLPQYA RPVADDQYLH PPPPSSMRHR ATSEAADGGC  60
GEIVEVQGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLSAH TAIQFYDVQD RLGFDRPSKA  120
VDWLIKKAKS SIDELAELPP WNPADAIRLA AANAKPRRTT AKTQISLSPP PQQQQQQQQL  180
HFGAGFDRGG AEHPSNESSF LPPSMDSDSI ADTIKSFFPV VGSSTEAPPN HQLMHNYHHH  240
PPDLLSRTNS QNQDLRLSLQ SFPDGPPSLL HHNHHHHTSA SASEPVLFYG QSNPLGFDTS  300
NSVSWEQQSS EFGRIQRLVA WNSGGGGAAD TGNGGGFVFA PPPSTASFQP VLGQSQQLYS  360
QRGPLQSSYS PMIRAWFDPH HHHQSISTDD INHHHHHHLP PPVHQSAIPG IGFASGEFSS  420
GFRIPARFQG QEEEQHDGLT HKPSSASSIS RH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11318RRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBM25215497Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3167040.0AK316704.1 Arabidopsis thaliana AT3G15030 mRNA, complete cds, clone: RAFL06-89-F15.
GenBankAP0003700.0AP000370.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K15M2.
GenBankAY0944440.0AY094444.1 Arabidopsis thaliana AT3g15030/K15M2_17 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882910.10.0hypothetical protein ARALYDRAFT_897773
SwissprotQ8LPR50.0TCP4_ARATH; Transcription factor TCP4
TrEMBLD7L3Y20.0D7L3Y2_ARALL; Putative uncharacterized protein
STRINGscaffold_301743.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24082771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.30.0TCP family protein